Haali media splitter is known to have issues with BSPlayer (unfortunately). Many problems were solved by uninstalling Haali splitter and installing Gabest splitter. (This is the one I use if that is of any help).
MKV files come nowadays encoded with x264 as video. So, CoreAVC anc CoreAAC will be also needed. But as far as I remember, they are included in CCCP. If not, try to uninstall the codec pack and install those.
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