Same problem here, also on an Asus Transformer Infinity (TF700T), running stock Jelly Bean firmware.
Used to work OK, now it does not.
I'm having the problem on any MKV file over 2GB, even e.g. 2.1GB.
Other observations: I can incrementally (with gestures) mostly seek forwards and backwards, though it doesn't work as smoothly as normal. Until, that is, the playback position gets past the 2GB mark. Then seeks in either direction often cause BSPlayer to think the playback is over and exit back to the file list.
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